Gene detail

Detailed information of OS493_023467-T1 in Lophelia pertusa

Genomic Location: scaffold_104:567095...567529
NR annotation: KAJ7384139.1, hypothetical protein OS493_023467 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91WG0	Acylcarnitine hydrolase OS=Mus musculus OX=10090 GN=Ces2c PE=1 SV=1
Q64176	Carboxylesterase 1E OS=Mus musculus OX=10090 GN=Ces1e PE=1 SV=1
Q8VCC2	Liver carboxylesterase 1 OS=Mus musculus OX=10090 GN=Ces1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00135 all species →	COesterase	Carboxylesterase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019819 all species →	Conserved_site	Carboxylesterase type B, conserved site	Interproscan
IPR050309 all species →	Family	Type-B Carboxylesterase/Lipase	Interproscan
IPR002018 all species →	Domain	Carboxylesterase, type B	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11559 all species →	CARBOXYLESTERASE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_023467-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023467-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023467-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

95TPM > 0

7Conditions

8.5Max TPM

2.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	2.00	5.79
polyp at pH7 6	18	12	0.90	2.20
coral polyp · control treatment	16	15	2.82	7.24
coral polyp · oil and dispersant treatment	16	13	2.59	8.50
coral polyp · oil treatment	16	16	3.13	7.67
coral polyp · dispersant treatment	16	14	2.06	7.99
Polyp	10	9	1.13	2.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.19
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.84
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.43
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.91
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.26
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.23
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.71
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.45
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.99
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.03
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.18
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.17
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.86
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.69
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.69
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.44
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.