Gene detail

Detailed information of OS493_023479-T1 in Lophelia pertusa

Genomic Location: scaffold_104:632007...632594
NR annotation: KAJ7384151.1, hypothetical protein OS493_023479 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O46421	Liver carboxylesterase 1 OS=Macaca fascicularis OX=9541 GN=CES1 PE=2 SV=1
O62763	Acetylcholinesterase OS=Felis catus OX=9685 GN=ACHE PE=3 SV=1
P10959	Carboxylesterase 1C OS=Rattus norvegicus OX=10116 GN=Ces1c PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00135 all species →	COesterase	Carboxylesterase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019826 all species →	Active_site	Carboxylesterase type B, active site	Interproscan
IPR050309 all species →	Family	Type-B Carboxylesterase/Lipase	Interproscan
IPR002018 all species →	Domain	Carboxylesterase, type B	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11559 all species →	CARBOXYLESTERASE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_023479-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023479-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023479-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

8.3Max TPM

1.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.52	4.05
polyp at pH7 6	18	18	2.15	6.47
coral polyp · control treatment	16	16	2.07	4.13
coral polyp · oil and dispersant treatment	16	14	1.03	4.38
coral polyp · oil treatment	16	16	2.41	8.28
coral polyp · dispersant treatment	16	16	1.22	3.80
Polyp	10	7	1.47	5.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.59
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.70
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.30
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.64
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.43
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.17
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.86
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.43
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.98
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.38
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.55
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.03
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.36
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.21
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.39
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.61
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.