Detailed information of OS493_023495-T1 in Lophelia pertusa

Genomic Location: scaffold_104:831896...837109
NR annotation: KAJ7384166.1, hypothetical protein OS493_023495 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q61753D-3-phosphoglycerate dehydrogenase OS=Mus musculus OX=10090 GN=Phgdh PE=1 SV=3
O08651D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus OX=10116 GN=Phgdh PE=1 SV=3
Q60HD7D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis OX=9541 GN=PHGDH PE=2 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003616 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00389
all species →		2-Hacid_dhD-isomer specific 2-hydroxyacid dehydrogenase, catalytic domainDomainInterproscan
PF02826
all species →		2-Hacid_dh_CD-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domainDomainInterproscan
PF19304
all species →		PGDH_interD-3-phosphoglycerate dehydrogenase intervening domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029753
all species →		Conserved_siteD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved siteInterproscan
IPR006139
all species →		DomainD-isomer specific 2-hydroxyacid dehydrogenase, catalytic domainInterproscan
IPR006140
all species →		DomainD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domainInterproscan
IPR045626
all species →		DomainD-3-phosphoglycerate dehydrogenase, ASB domainInterproscan
IPR029752
all species →		Conserved_siteD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1Interproscan
IPR029009
all species →		Homologous_superfamilyAllosteric substrate binding domain superfamilyInterproscan
IPR036291
all species →		Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42938
all species →		FORMATE DEHYDROGENASE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016616
all species →		Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorInterproscan
GO:0051287
all species →		Molecular FunctionNAD bindingInterproscan
GO:0004617
all species →		Molecular Functionphosphoglycerate dehydrogenase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_023495-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_023495-T1 global co-expression network
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