Detailed information of OS493_023504-T1 in Lophelia pertusa

Genomic Location: scaffold_104:972891...977716
NR annotation: KAJ7384175.1, Cleavage polyadenylation factor subunit clp1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A7RG82Protein CLP1 homolog OS=Nematostella vectensis OX=45351 GN=v1g236308 PE=3 SV=1
A2VE01Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Bos taurus OX=9913 GN=CLP1 PE=2 SV=1
Q5ZJL4Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Gallus gallus OX=9031 GN=CLP1 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004210 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16575
all species →		CLP1_PmRNA cleavage and polyadenylation factor CLP1 P-loopDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032319
all species →		DomainPolyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domainInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR045116
all species →		FamilyPolyribonucleotide 5-hydroxyl-kinase Clp1/Grc3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12755
all species →		CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1PInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006378
all species →		Biological Processobsolete mRNA polyadenylationInterproscan
GO:0006388
all species →		Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0051731
all species →		Molecular Functionpolynucleotide 5'-hydroxyl-kinase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_023504-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_023504-T1 global co-expression network
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