Gene detail

Detailed information of OS493_023508-T1 in Lophelia pertusa

Genomic Location: scaffold_104:1000966...1004951
NR annotation: KAJ7384179.1, lactadherin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08431	Lactadherin OS=Homo sapiens OX=9606 GN=MFGE8 PE=1 SV=3
O35474	EGF-like repeat and discoidin I-like domain-containing protein 3 OS=Mus musculus OX=10090 GN=Edil3 PE=1 SV=2
O43854	EGF-like repeat and discoidin I-like domain-containing protein 3 OS=Homo sapiens OX=9606 GN=EDIL3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000536 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050633 all species →	Family	Neuropilin/Multicopper Oxidase/Coagulation Factor	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46806 all species →	F5/8 TYPE C DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023508-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023508-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

43.2Max TPM

5.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.97	12.69
polyp at pH7 6	18	17	5.26	12.43
coral polyp · control treatment	16	16	8.39	43.16
coral polyp · oil and dispersant treatment	16	16	5.27	41.37
coral polyp · oil treatment	16	15	3.81	12.50
coral polyp · dispersant treatment	16	16	7.47	19.48
Polyp	10	10	3.95	8.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.92
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.26
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.23
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.43
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.43
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.93
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.72
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.16
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.12
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.77
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.25
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.57
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.55
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.81
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.06
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.48
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.28
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.71
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.35
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.56
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.84
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.37

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.