Gene detail

Detailed information of OS493_023513-T1 in Lophelia pertusa

Genomic Location: scaffold_104:1047834...1050770
NR annotation: KAJ7384184.1, hypothetical protein OS493_023513 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8HYJ1	Translocase of chloroplast 34 homolog, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=TOC34 PE=1 SV=1
A9SV59	Translocase of chloroplast 101, chloroplastic OS=Physcomitrium patens OX=3218 GN=TOC101 PE=3 SV=1
A9SY65	Translocase of chloroplast 108, chloroplastic OS=Physcomitrium patens OX=3218 GN=TOC108 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002055 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04548 all species →	AIG1	AIG1 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006703 all species →	Domain	AIG1-type guanine nucleotide-binding (G) domain	Interproscan
IPR045058 all species →	Family	GTPase GIMA/IAN/Toc	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10903 all species →	GTPASE, IMAP FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023513-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023513-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

54.9Max TPM

19.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.09	54.86
polyp at pH7 6	18	18	30.14	54.15
coral polyp · control treatment	16	16	22.77	52.41
coral polyp · oil and dispersant treatment	16	16	11.35	37.20
coral polyp · oil treatment	16	16	10.89	29.03
coral polyp · dispersant treatment	16	16	17.38	47.58
Polyp	10	10	16.10	32.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.38
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.51
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.82
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.94
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.64
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.63
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.77
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.76
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.27
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.64
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.31
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.93
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.49
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.13
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.51
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.73
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.19
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.82
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.73
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.76
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.33
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.32
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.72
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.26
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.29
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.39
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.58
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.55
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.63
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.61
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	32.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.57
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	28.65
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.37
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.25

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.