Gene detail

Detailed information of OS493_023517-T1 in Lophelia pertusa

Genomic Location: scaffold_104:1064446...1065976
NR annotation: KAJ7384188.1, hypothetical protein OS493_023517 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q552Z6	GTP-binding protein A OS=Dictyostelium discoideum OX=44689 GN=gtpA PE=3 SV=1
O81283	Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC159 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002055 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04548 all species →	AIG1	AIG1 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045058 all species →	Family	GTPase GIMA/IAN/Toc	Interproscan
IPR006703 all species →	Domain	AIG1-type guanine nucleotide-binding (G) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10903 all species →	GTPASE, IMAP FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023517-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023517-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

95TPM > 0

7Conditions

5.6Max TPM

1.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	1.09	3.13
polyp at pH7 6	18	12	0.42	1.69
coral polyp · control treatment	16	16	1.86	5.65
coral polyp · oil and dispersant treatment	16	14	0.94	2.46
coral polyp · oil treatment	16	15	1.19	3.49
coral polyp · dispersant treatment	16	14	0.67	1.93
Polyp	10	8	0.83	2.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.34
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.79
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.76
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.75
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.30
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.20
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.26
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.19
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.38
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.49
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.92
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.