Gene detail

Detailed information of OS493_023518-T1 in Lophelia pertusa

Genomic Location: scaffold_104:1075147...1076614
NR annotation: KAJ7384189.1, hypothetical protein OS493_023518 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8HYJ1	Translocase of chloroplast 34 homolog, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=TOC34 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002055 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04548 all species →	AIG1	AIG1 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006703 all species →	Domain	AIG1-type guanine nucleotide-binding (G) domain	Interproscan
IPR045058 all species →	Family	GTPase GIMA/IAN/Toc	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10903 all species →	GTPASE, IMAP FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023518-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023518-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

10.4Max TPM

3.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.37	5.93
polyp at pH7 6	18	17	3.64	5.08
coral polyp · control treatment	16	16	4.50	10.43
coral polyp · oil and dispersant treatment	16	15	2.62	5.01
coral polyp · oil treatment	16	16	3.43	5.52
coral polyp · dispersant treatment	16	16	2.21	5.04
Polyp	10	10	2.05	3.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.25
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.33
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.73
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.27
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.56
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.47
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.88
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.01
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.40
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.63
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.94
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.77
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.31
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.54
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.02
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.35

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.