Gene detail

Detailed information of OS493_023522-T1 in Lophelia pertusa

Genomic Location: scaffold_104:1118174...1125415
NR annotation: KAJ7384193.1, Sterol O-acyltransferase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61263	Sterol O-acyltransferase 1 OS=Mus musculus OX=10090 GN=Soat1 PE=1 SV=2
O77760	Sterol O-acyltransferase 1 OS=Chlorocebus aethiops OX=9534 GN=SOAT1 PE=2 SV=1
P35610	Sterol O-acyltransferase 1 OS=Homo sapiens OX=9606 GN=SOAT1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006243 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03062 all species →	MBOAT	MBOAT, membrane-bound O-acyltransferase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004299 all species →	Family	Membrane bound O-acyl transferase, MBOAT	Interproscan
IPR014371 all species →	Family	Sterol O-acyltransferase, ACAT/DAG/ARE types	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10408 all species →	STEROL O-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008374 all species →	Molecular Function	O-acyltransferase activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0008203 all species →	Biological Process	cholesterol metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00637	SOAT; sterol O-acyltransferase	EC:2.3.1.26	Cholesterol metabolism	ko04979	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023522-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

68.9Max TPM

29.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.75	43.54
polyp at pH7 6	18	18	29.75	48.23
coral polyp · control treatment	16	16	34.54	51.11
coral polyp · oil and dispersant treatment	16	16	39.68	68.91
coral polyp · oil treatment	16	16	36.58	63.75
coral polyp · dispersant treatment	16	16	23.31	40.25
Polyp	10	9	14.67	30.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.23
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.12
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.37
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.81
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.78
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.16
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.52
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.38
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.71
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.54
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.25
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.62
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.24
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.67
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.16
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.38
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.12
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.93
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.23
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.20
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.30
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.46
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.73
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.23
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.64
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	24.54
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.69
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.59
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.