Gene detail

Detailed information of OS493_023526-T1 in Lophelia pertusa

Genomic Location: scaffold_104:1180094...1187593
NR annotation: KAJ7384197.1, hypothetical protein OS493_023526 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0II68	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase OS=Bos taurus OX=9913 GN=ACMSD PE=2 SV=1
Q8TDX5	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase OS=Homo sapiens OX=9606 GN=ACMSD PE=1 SV=1
Q8R519	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase OS=Mus musculus OX=10090 GN=Acmsd PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003888 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04909 all species →	Amidohydro_2	Amidohydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032465 all species →	Family	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21240 all species →	2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016831 all species →	Molecular Function	carboxy-lyase activity	Interproscan
GO:0019748 all species →	Biological Process	secondary metabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023526-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023526-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

75.0Max TPM

24.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.29	26.19
polyp at pH7 6	18	18	17.08	29.20
coral polyp · control treatment	16	16	32.07	74.99
coral polyp · oil and dispersant treatment	16	16	42.43	71.34
coral polyp · oil treatment	16	16	22.48	40.57
coral polyp · dispersant treatment	16	16	25.43	43.59
Polyp	10	10	16.07	25.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.45
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.66
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.14
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.91
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.64
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.02
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.86
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.77
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.35
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.43
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.99
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.63
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.06
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.47
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.59
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.67
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.55
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.04
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.47
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.78
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.71
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.35
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.82
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.22

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.