Gene detail

Detailed information of OS493_023530-T1 in Lophelia pertusa

Genomic Location: scaffold_104:1319935...1320632
NR annotation: KAJ7384201.1, hypothetical protein OS493_023530, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5E9K3	Pyridoxine-5'-phosphate oxidase OS=Bos taurus OX=9913 GN=PNPO PE=2 SV=1
Q9NVS9	Pyridoxine-5'-phosphate oxidase OS=Homo sapiens OX=9606 GN=PNPO PE=1 SV=1
Q91XF0	Pyridoxine-5'-phosphate oxidase OS=Mus musculus OX=10090 GN=Pnpo PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003704 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01243 all species →	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012349 all species →	Homologous_superfamily	FMN-binding split barrel	Interproscan
IPR011576 all species →	Domain	Pyridoxamine 5'-phosphate oxidase, putative	Interproscan
IPR000659 all species →	Family	Pyridoxamine 5'-phosphate oxidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10851 all species →	PYRIDOXINE-5-PHOSPHATE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004733 all species →	Molecular Function	pyridoxamine phosphate oxidase activity	Interproscan
GO:0008615 all species →	Biological Process	pyridoxine biosynthetic process	Interproscan
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023530-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023530-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

84TPM > 0

7Conditions

12.1Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	11	1.43	3.28
polyp at pH7 6	18	11	1.68	3.70
coral polyp · control treatment	16	14	2.98	8.84
coral polyp · oil and dispersant treatment	16	13	2.52	10.96
coral polyp · oil treatment	16	15	2.87	12.09
coral polyp · dispersant treatment	16	13	2.50	7.77
Polyp	10	7	1.22	2.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.07
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.34
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.25
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.75
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.94
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.85
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.74
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.73
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.09
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.37
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.21
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.72
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.77
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.