Gene detail

Detailed information of OS493_023543-T1 in Lophelia pertusa

Genomic Location: scaffold_105:167719...168276
NR annotation: KAJ7378296.1, Anaphase-promoting complex subunit 10 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UM13	Anaphase-promoting complex subunit 10 OS=Homo sapiens OX=9606 GN=ANAPC10 PE=1 SV=1
Q8K2H6	Anaphase-promoting complex subunit 10 OS=Mus musculus OX=10090 GN=Anapc10 PE=1 SV=1
Q2YDH1	Anaphase-promoting complex subunit 10 OS=Bos taurus OX=9913 GN=ANAPC10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009478 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03256 all species →	ANAPC10	Anaphase-promoting complex, subunit 10 (APC10)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR016901 all species →	Family	Anaphase-promoting complex subunit APC10/Doc1	Interproscan
IPR004939 all species →	Domain	APC10/DOC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12936 all species →	ANAPHASE-PROMOTING COMPLEX 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005680 all species →	Cellular Component	anaphase-promoting complex	Interproscan
GO:0031145 all species →	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0070979 all species →	Biological Process	protein K11-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03357	APC10, ANAPC10, DOC1; anaphase-promoting complex subunit 10	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023543-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

10.4Max TPM

2.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.91	5.13
polyp at pH7 6	18	18	2.94	10.45
coral polyp · control treatment	16	16	2.73	6.11
coral polyp · oil and dispersant treatment	16	16	1.58	4.79
coral polyp · oil treatment	16	16	2.42	3.84
coral polyp · dispersant treatment	16	15	1.70	5.08
Polyp	10	10	2.93	7.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.48
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.45
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.87
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.09
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.18
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.34
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.32
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.76
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.37
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.61
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.48
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.33
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.93
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.10

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.