Gene detail

Detailed information of OS493_023564-T1 in Lophelia pertusa

Genomic Location: scaffold_105:343330...348774
NR annotation: KAJ7378317.1, hypothetical protein OS493_023564 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O05218	Glutathione hydrolase-like YwrD proenzyme OS=Bacillus subtilis (strain 168) OX=224308 GN=ywrD PE=1 SV=1
P54422	Glutathione hydrolase proenzyme OS=Bacillus subtilis (strain 168) OX=224308 GN=ggt PE=1 SV=1
P63186	Glutathione hydrolase proenzyme OS=Bacillus subtilis subsp. natto OX=86029 GN=ggt PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003555 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01019 all species →	G_glu_transpept	Gamma-glutamyltranspeptidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043138 all species →	Homologous_superfamily	Gamma-glutamyltranspeptidase, large subunit, C-terminal domain	Interproscan
IPR052896 all species →	Family	Gamma-glutamyltransferase-like enzyme	Interproscan
IPR000101 all species →	Family	Gamma-glutamyltranspeptidase	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR043137 all species →	Homologous_superfamily	Gamma-glutamyltranspeptidase, small subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43881 all species →	GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006751 all species →	Biological Process	glutathione catabolic process	Interproscan
GO:0036374 all species →	Molecular Function	glutathione hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00681	ggt; gamma-glutamyltranspeptidase / glutathione hydrolase	EC:2.3.2.2 EC:3.4.19.13	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023564-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

12.6Max TPM

5.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.50	7.88
polyp at pH7 6	18	18	5.50	7.62
coral polyp · control treatment	16	16	8.30	12.64
coral polyp · oil and dispersant treatment	16	16	5.75	11.36
coral polyp · oil treatment	16	16	7.12	12.17
coral polyp · dispersant treatment	16	16	4.78	11.15
Polyp	10	10	2.97	6.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.06
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.37
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.83
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.30
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.76
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.71
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.08
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.03
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.43
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.32
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.17
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.17
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.34
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.15
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.35
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.06
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.75

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.