Detailed information of OS493_023606-T1 in Lophelia pertusa

Genomic Location: scaffold_105:728883...730246
NR annotation: KAJ7378351.1, helicase [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E9QAM53'-5' exoribonuclease HELZ2 OS=Mus musculus OX=10090 GN=Helz2 PE=1 SV=1
Q0P4R5DIS3-like exonuclease 1 OS=Xenopus tropicalis OX=8364 GN=dis3l PE=2 SV=2
Q6GN11DIS3-like exonuclease 1 OS=Xenopus laevis OX=8355 GN=dis3l PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0049831 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00773
all species →		RNBRNB domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR001900
all species →		DomainRibonuclease II/RInterproscan
IPR022966
all species →		Conserved_siteRibonuclease II/R, conserved siteInterproscan
IPR050180
all species →		FamilyRNR RibonucleaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23355
all species →		RIBONUCLEASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0004540
all species →		Molecular FunctionRNA nuclease activityInterproscan
GO:0000175
all species →		Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0006402
all species →		Biological ProcessmRNA catabolic processInterproscan
GO:0010587
all species →		Biological ProcessmiRNA catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_023606-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_023606-T1 global co-expression network
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