Detailed information of OS493_023635-T1 in Lophelia pertusa

Genomic Location: scaffold_105:1001228...1008178
NR annotation: KAJ7378380.1, helicase [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E9QAM53'-5' exoribonuclease HELZ2 OS=Mus musculus OX=10090 GN=Helz2 PE=1 SV=1
P42694Probable helicase with zinc finger domain OS=Homo sapiens OX=9606 GN=HELZ PE=1 SV=2
Q6DFV5Probable helicase with zinc finger domain OS=Mus musculus OX=10090 GN=Helz PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000671 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00773
all species →		RNBRNB domainDomainInterproscan
PF13087
all species →		AAA_12AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001900
all species →		DomainRibonuclease II/RInterproscan
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR041679
all species →		DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR047187
all species →		DomainUpf1-like, C-terminal helicase domainInterproscan
IPR050180
all species →		FamilyRNR RibonucleaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23355
all species →		RIBONUCLEASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0004540
all species →		Molecular FunctionRNA nuclease activityInterproscan
GO:0000175
all species →		Molecular Function3'-5'-RNA exonuclease activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_023635-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_023635-T1 global co-expression network
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