Gene detail

Detailed information of OS493_023640-T1 in Lophelia pertusa

Genomic Location: scaffold_105:1039007...1048033
NR annotation: KAJ7378385.1, helicase [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_023640-T1

ATGTCTAACCACCTGCTTGAGCTGCAATTAAATCACGGCTTCTTCACACACATCCTGGTAGACGAGGCTGCTCAAGCCCTGGAGCCTAAGGCATTGATACCACTGGCGTTAGCCGCGCCAAACACGAAGGTTGTCTTCACTGGAGATCACATGCAGATGAGCCCGGAGGTGTATTCGCATCTTGCACGAGAGTGGGGTCTACAGAGGTCGCTTCCCGAGAGACTGTTTGATCATTTATACCGTGAAGAACAACCGTTAGATTGCAAGGTGATGTTCTTAACGGAAAATTACCGGTGCCATCCTGAAATCCTACAATTTCCCTCTGATAACTTCTACCAGAGTGGTCTCATCGCCAGTGGTGAACAGGTCTCACATCCAAGGCTAGGAGCAATGTTATTCTACTCGGTCCATGGAGTGGAGGAAGCGAGAGAAAATTCGTACATAAACACAGCAGAAGTTGATGAGGTTGTTAACAGGGTCAAGGAGCTGGCCAATGACTGGCCGGTGGAGTGGAAGAAGAAAGATCTTTCTCAGATTGGCGTCATATCCGCCTACATGACTCAGGTGCGAGCTATTCGAACATATCTCACAAGGGAAAGCAGGGAGCTACAGAAGGTTACAGTAGAAAGTATTGAAAACGTTCAAGGAAAAGAATTTCGTGCCTTATTCATCAGCACTGTCCGCACATCTCTGACCTGCCAAAGACGTGAAGGAGAATCTCAGTCACCCTACTGGGAATTCTTGTCAGACCCCAAACTCTTGAACACGGCAATTACAAGAGCGAAGTCCTTGGTAGCCGTTGTTGGGGATGGTGTTTCGTTGTGTACTGTTGGCGACTGTAGAGGCAACTGGCTAGATTACATTAGAAGATGCCACGAACTCAGAACTCTGCATGGAACGTCATATAGATATATATTGAAAGAAATAAACACCCTTCACGCCAAAATTTATTTACTGAATCCAGAAGCAGTCGATTTTGTTCCAACAAAATCAATGGAAGTCGACAACAAAGAGTCCCAGTCTATGGACTGCGCTACTCAACCAGACAAATTCCAAGGAAACAGAAACAACAACCCAACCGAAGAGAACGTGTCAGGGATTGCAAAGACGAAGAAGAAGAAAAAAGACGAAGACGAAGAGGAAAACGAAGAAGAGCAACAGCAGAAAACTACTCAATCCTTAGAAGAACTTCAATACCAGGGCGATTGTTCATCTCAGGAAGAAGTCCAGAGTAGGAATGAGTCTGAAGATGAAGCTGACGTCGAGCAGAATACTTTTCACTTTTTTGAAGAATTCCGCCGGGAAACTTTTGAAGACGAAGCTGTCTTTCCAAGGTACTTCGACAAGATAATCCAGGCACTCGTGGAAAAGTGTAAAGAGACAAAGGAGAAAGGACGACGTCCTCGTGGATCATCAGAAAGCGAATCGTTTCCCCCATTGAATGCCGCTGCAATATCAAGTCCAAAAAAGTCTAACATGGAGAAACGTTCAAGTCGTCAAGAAAAGTCGCGTTTTTCTGACCTTCCTTCTGATGACTACCAAATCGTCAATGTCAATGGTCGCCTGAAAGTTCGCCTTGTGAATCTTGGATTTCATCAGAAGCAATCTGATCGGCACGAGAGGATTACTGCTCCCTCCAGGCAACATCACGATGGCTTTCTCGAGTCAGAGCTATTACAGAAACTGATGCTTGAAAACCCCAACACGTATCTCTCTTGCACACTTCGTCTCAATTCCGAGATTTTTCGCATGGCATATGCAGCAGTATCCGACACGAAGACCCCAGACATTAAAATCAAGGCAAGAATCCGGGGAGTGTTCGATATGGATCATGTGGTTGTCAAAAAAGTAGATAACCAACCTCCTTCCAGTGATGGTGTTCCTCGTTCCAACGGAAAAATTGTTGGTGTACTGCATCACATCATCAGTCCTCACGAACGTGAGTTTGTCTGCAAAGTGGATTACGAAAACCCTCAACTAATGCTTCCAATCAATAAGTCAGTTTCCAAAATAGCGATCCTATCTGCAAATGGTGTTAGGGGTGTACCTCTCTACAGAGAAATTCGTGATAGTGATGAAAAGGCGATGAAAGTTGACGACATGGACCTCGCGGAAGTTCTCAGCGGAAAGTACATGTTTCTTGTTCAGTACCTACAGTGGAGGTCAGATTGCTCTCACCCTTTAGGCATCATCGTCAGAAAACTGCCAAAACGGTATACCTTGAATGACAGCATGGAGATTTTATTCGCTGAACATGGAGTTAGGAAGTCGTTCGACGAGGAGTGTAGACGGCAAGTTCGCGAAAAGTTTCCACCACATTGGTCAATACCAGCTGAGGAGAATCAAAGTCGCAAGAAAATTGATGGAGCCTTCACGATTGATCCCGAAAAATCTAAGGATCTCGATGATGCACTTACATTGGAACAGCTCTCGGATTCTGTGTACCAGGTAGGGGTTCACATCGCAGACGTGAGTTATTTTGTGGAGGCTGGGACCCAGTTGGATAAAGAAGCTTTGTACCGCTGCACGTCCTACTATCCTGGTCACGGCTACCAAAACGTTCCAATGCTACCGTGTGAGCTAAGCGAAAATCATTGTAGCCTTCTTCCTGGTAAAGATCGTTTGTGCCTATCAGTGTTTCTTGACATGTCAGAAGAAGGAAAACTTGTTGGTCCGCCACAGATAAGCCGCACAATTGTCAGGTCTTCTTGTCAGCTCACTTACTCTGACGCCCAGAACCTTATTGATGGTCAAGAGAGTTCTCTGCACCAGTTTCCGTTTCCGAAGGAAGCTGGAGAGAAAATTAAAGACATGAGTGCCCTTGCGCAAAGAAGAAGAAAGTTAAGACTGGAGATGCTGGTTGTGATCATTGGTCGAACAGTGATGATCCAGAAAATTTTGAAGCACACGAATTAG

Transcript

OS493_023640-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DFV5	Probable helicase with zinc finger domain OS=Mus musculus OX=10090 GN=Helz PE=1 SV=2
P42694	Probable helicase with zinc finger domain OS=Homo sapiens OX=9606 GN=HELZ PE=1 SV=2
Q6NYU2	Probable helicase with zinc finger domain OS=Danio rerio OX=7955 GN=helz PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000671 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF00773 all species →	RNB	RNB domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050180 all species →	Family	RNR Ribonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355 all species →	RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0010587 all species →	Biological Process	miRNA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023640-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_023640-T1 global co-expression network