Gene detail

Detailed information of OS493_023641-T1 in Lophelia pertusa

Genomic Location: scaffold_105:1048090...1061499
NR annotation: KAJ7378386.1, helicase [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_023641-T1

ATGCCAGAGATAGCACCGTTAAGAACTCAACTGCCACCCAAAGATCACAAACTGAGTGATTGGGTTAGACAATACGGGCAGCTTATCAAGCATTCTCAGTTTCTTCGTGGCTTTTATTCAGAAGAAATCCTGAGCGAAATGACGAAAGACGCAAGAAGTTCAGAAGCCGCAGAATTCAAAGTGCAAGAGTCCGTTTGGTCCGAACTCTGCAATGCTGCAGAGTCTGGAGACCAAGCCAAGTTACACGAATTGATTTGTAACGAGAGCAATCACCCTCAGTTGGCTGTGGCAAATTCACAGTTTCGACGCATTCAGCCCAAGTCTCAATACGTCTGCAAAAGAGATCAACCAGGAGAAAACGCTGCGCACTTCTCTCTGGGGATGAGTTGCTATACACACTTCACGTCACCTATACGACGCTACATAGATATCCAAGTACATCGACTTGTGTTGGATTTAATCTCTCAAGGCCGCAATGCCAACAGACCTTCGAAGGACCAAGTTGCCAAGGTGTGCCGTCGTTCCACGTTTGCCCAAGACAACTCCAGAAAGTTTGACAAGGCATGCAGTAAAGTGCAGCTGGCCGCGAAGCTCAAGGAAAAAAGTCACGAAACCACAGCAGTCATTGCCATGATCGAGAAACAAGCACTTAGTTTGGAAATTCCGAACCAGAAATACAACCATCTCTCGGCACGACAGAGAAGGGTTCAATTGAGCGATCTTAATCTATTTACCTTTGATATTGGTCAGAATGGTTCCGAAATAGTCCTTACCTGGAAGCTAAGATTGTACATAGCTCCTAAAGAAAACATCATCGAGGAAGCCACAAAGGAAAGAGAGAAAGTCGTTGCCCTTTTATCTGAAGGATTGGTTGGAAAAGGAGAAGTCTTGAACTTGCCAGCAGAGAGTTGGCAGCAAATTTTGAAAGCACTTCGAGAAGGAAACTACAAAGCCCTCGCAATGTTGATTAGAAGGACGGAGAGATATCGTCAACTGCCGCCACGGTTACCTGGGTCAAACAGGTATAGCAAACCGTATAATAACTCCAAACCTGAAGCAAACATGGAGCACTTCTACGAGAAAAAAATGTCTCTGAGGACGTTTGATATCGTAAACGTTCAACTGACCGCACACATGACAAACGGAGTTTTCCATCCCGAAATTCAGCTCTTCAAGATCAATCCCAGCGTGCACATTTGCGTGGAGCACCGTAAATATCCTAGAGATTGTTTTGCAACGACATCAAGGTACCAAGCATCTCGGAAGAAGTACTCAAGTGTAGACAAGTACATTAATGCCTGGAAACCCGTCCTTGCCATGGAAGCTGCTACTGGAGCCGTGAAGGAAAGCGACGAGTTCACCATACACCACTTAATGGTTCAGTGGATAAAAGAGATCGGTGAAAGCCTGGAAGGTTCTTTCAACCTCCAAAAAGAATACTGCGAAAGTCGTCAAATAGAATTTTGTGCAGGAGATTTTGTTTGCGTCCACGTGCGGGAAGACAGGTTCATGAAGAATACACAATCGGGAACAGCTGCCACTGTGAGGAGCACATCACAGGTAGAGACAAATTCTTTGAATGAAGAAGAGCTCAACGTCACTCAATTAGCAGCTCCCTCGTGCTTAGCAAACAACTCCCGTCATGAATCCAGAAGTGCTTCACCGAGTTTCTGGGTGGGACACTGTGTCATCAAGCATGTGCGTACTAAGTTGTCGAATATGGACACTTTGATAGTCACGATGGATCTTCATCAGTCAGCATCTGTTTTTCCCGAGGAGCTGTTGAATGGAGGTGGCCACCAGAGTACCTTAAGCGTTATTCACCGGTCCCTTCCCCACAGGCGAATGTTTGCAGCTCTGTGTGACCTACGATGTGCCTCCCAACTAGCTCACTCCATCTGTATGGGACATGAGCCAGACCAAGAAGACTTCGGGGTCCTGCCTGATTCCAACCTGTCAATTAAGTGCGGATTTAAGCCCTTAAATCTGTACCAAGAAGAAGCAGTGAAAGAGGCGCTTGTGAAGCCATTTACCCTTGTTCTGGGTCCTCCGGGTACTGTGCAGGCAGAGTTAAAAGCACCTTCACAAGTCATATACTGCGGACCCTCCAACAAGTCAGTGGACGTGGTAGCTAAATACATGCTGCAAATTCCTGGACTCAAGATCATCCGCGTGTACGGAGATCTTAGGGAACAGGCAGAGTTTCCAATCCCTAACAAACGTAAACATCTGAAAATATCAACCGACGATGAGGCTCAGATATCCAATAAGGAACTGAAGGCAGTGTCTCTACATCACATCATTCGAAGTGATAAGTGTCGGTTTGCCTCCCAGCTTCAAGATTATGAGAGCGCGTTTAAAGCTGATAGGGAGGAAGGCGTCAGGTCCAGCGACAAAGAAGTTGAAGGCTACCGTAAGTTAATTGGTGAGGCCGAAGATTGGGTACTTCAGTCATCAGGAGCTCAGATTATCTTGTGCACATGCGCAACTGCTGGTAGTCCAAGGATAATGAAATCCTGCAACAACATCCAGCAGTGTATTGTGGATGAATGTGGCATGTGCTTGGAACCTGAATCACTCGTGCCGATCACGTGCTCGGGAGCGCAACAAGTGGTTCTGATTGGTGATCACAAGCAGTTACAGCCCGTCATCCAGGACCACGTGGCAAAAACACTCGGCTTGGGCGTGTCTATGTTCGAGAGGCTTTCTAAACGAGCTAAGATGCTGGAGTTGCAATACAGAATGCAAAAAGATATCTGCAAGTTTCCGTCAAATTACTTCTATGAGGGAAAGTTGAAAACAGATACATCTGTGCCGACTCGAGACCCTCGTTTACAGTCCTTTTGGCCAACGAACGTCCCCATGGCATTTTGCCATGTCGAAGGTGAAGAGGAAAGTAGCGCCATTAAGACAGCACAGAGTAATGAACAGTCGAAAGCAAATGAGAAGGAAGTCAGAAAAGTGGAACATGTGGCGAGATGTTTAGTTCACAAGAACGGCGTGCGCGCGTCAGATGTCGTTATCTTGTCACCTTACAGAGAACAGCGAAGTAGAATAAGCGCAGCCTTGCAAGGAGTGTTCAAGTGCAAAGAAATTCCTGTCACAACAATCGCGAAAAGCCAAGGTAACAAGAACCTACTGATACACCATCCCATGTGGCAGAACTTGATAGAATTCTACGAGAAAAATAATTGCTTGGTTGATGAATCTAACTGGCCTAGAAACTAA

Transcript

OS493_023641-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BYK8	3'-5' exoribonuclease HELZ2 OS=Homo sapiens OX=9606 GN=HELZ2 PE=1 SV=7
E9QAM5	3'-5' exoribonuclease HELZ2 OS=Mus musculus OX=10090 GN=Helz2 PE=1 SV=1
Q9HEH1	Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=2E4.130 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000671 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00773 all species →	RNB	RNB domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050534 all species →	Family	Coronaviruses polyprotein 1ab	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR022966 all species →	Conserved_site	Ribonuclease II/R, conserved site	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788 all species →	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023641-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_023641-T1 global co-expression network