Gene detail

Detailed information of OS493_023659-T1 in Lophelia pertusa

Genomic Location: scaffold_105:1203958...1205558
NR annotation: KAJ7378403.1, helicase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9QAM5	3'-5' exoribonuclease HELZ2 OS=Mus musculus OX=10090 GN=Helz2 PE=1 SV=1
Q9BYK8	3'-5' exoribonuclease HELZ2 OS=Homo sapiens OX=9606 GN=HELZ2 PE=1 SV=7

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000671 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR050534 all species →	Family	Coronaviruses polyprotein 1ab	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788 all species →	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023659-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023659-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

87TPM > 0

7Conditions

20.4Max TPM

5.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	3.13	11.77
polyp at pH7 6	18	7	1.55	7.61
coral polyp · control treatment	16	16	7.14	20.44
coral polyp · oil and dispersant treatment	16	14	4.66	13.41
coral polyp · oil treatment	16	15	6.96	13.13
coral polyp · dispersant treatment	16	14	5.53	14.02
Polyp	10	9	8.62	18.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.44
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.46
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.15
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.66
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.09
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.12
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.30
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.55
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.35
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.10
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.55
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.31
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.48
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.80
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.