Gene detail

Detailed information of OS493_023730-T1 in Lophelia pertusa

Genomic Location: scaffold_106:993639...995695
NR annotation: KAJ7371699.1, Pleckstrin y domain-containing A member 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003419 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051364 all species →	Family	Cytokinesis and Rho signaling-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21538 all species →	ANILLIN/RHOTEKIN RTKN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0000915 all species →	Biological Process	actomyosin contractile ring assembly	Interproscan
GO:0005826 all species →	Cellular Component	actomyosin contractile ring	Interproscan
GO:0031106 all species →	Biological Process	septin ring organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023730-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023730-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

39.4Max TPM

16.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.16	39.37
polyp at pH7 6	18	18	16.35	31.74
coral polyp · control treatment	16	16	17.48	30.92
coral polyp · oil and dispersant treatment	16	16	19.56	38.95
coral polyp · oil treatment	16	16	20.15	37.66
coral polyp · dispersant treatment	16	16	15.83	28.50
Polyp	10	10	7.16	24.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.43
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.03
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.42
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.66
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.37
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.06
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.48
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.55
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.82
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.60
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.63
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.73
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.37
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.80
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.30
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.22
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.72
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.28
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.50
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.56
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.37
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	24.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.84

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.