Gene detail

Detailed information of OS493_023758-T1 in Lophelia pertusa

Genomic Location: scaffold_107:123481...133160
NR annotation: KAJ7357629.1, H(+)/Cl(-) exchange transporter 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51790	H(+)/Cl(-) exchange transporter 3 OS=Homo sapiens OX=9606 GN=CLCN3 PE=1 SV=2
O18894	H(+)/Cl(-) exchange transporter 3 OS=Oryctolagus cuniculus OX=9986 GN=CLCN3 PE=2 SV=3
Q9R279	H(+)/Cl(-) exchange transporter 3 OS=Cavia porcellus OX=10141 GN=CLCN3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003874 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00654 all species →	Voltage_CLC	Voltage gated chloride channel	Family	Interproscan
PF00571 all species →	CBS	CBS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001807 all species →	Family	Chloride channel, voltage gated	Interproscan
IPR000644 all species →	Domain	CBS domain	Interproscan
IPR046342 all species →	Homologous_superfamily	CBS domain superfamily	Interproscan
IPR014743 all species →	Homologous_superfamily	Chloride channel, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45711 all species →	CHLORIDE CHANNEL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005247 all species →	Molecular Function	voltage-gated chloride channel activity	Interproscan
GO:0006821 all species →	Biological Process	chloride transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015299 all species →	Molecular Function	obsolete solute:proton antiporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023758-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023758-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

57.4Max TPM

18.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.89	20.39
polyp at pH7 6	18	18	12.05	17.41
coral polyp · control treatment	16	16	26.41	47.33
coral polyp · oil and dispersant treatment	16	16	23.97	37.71
coral polyp · oil treatment	16	16	21.83	39.33
coral polyp · dispersant treatment	16	16	17.10	34.17
Polyp	10	9	18.52	57.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.47
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.34
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.19
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.02
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.08
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.98
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.68
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.49
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.63
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.52
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.38
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.67
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.33
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.39
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.74
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.50
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.02
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	57.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	44.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	38.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.46
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.07
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.