Detailed information of OS493_023766-T1 in Lophelia pertusa

Genomic Location: scaffold_107:183622...184500
NR annotation: KAJ7357636.1, High mobility group box 1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4WY33Non-histone chromosomal protein 6 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=nhp6 PE=3 SV=1
P40632High mobility group protein homolog NHP1 OS=Babesia bovis OX=5865 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002244 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09011
all species →		HMG_box_2HMG-box domainDomainInterproscan
PF00505
all species →		HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009071
all species →		DomainHigh mobility group box domainInterproscan
IPR036910
all species →		Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR050342
all species →		FamilyHigh Mobility Group Box (HMGB)Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48112
all species →		HIGH MOBILITY GROUP PROTEIN DSP1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0008301
all species →		Molecular FunctionDNA binding, bendingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_023766-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_023766-T1 global co-expression network
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