Gene detail

Detailed information of OS493_023783-T1 in Lophelia pertusa

Genomic Location: scaffold_107:385423...386611
NR annotation: KAJ7357652.1, Glucosamine-6-phosphate isomerase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PA43	Glucosamine-6-phosphate deaminase 2 OS=Xenopus laevis OX=8355 GN=gnpda2 PE=2 SV=1
A4IHW6	Glucosamine-6-phosphate deaminase 2 OS=Xenopus tropicalis OX=8364 GN=gnpda2 PE=2 SV=1
A4FV08	Glucosamine-6-phosphate deaminase 1 OS=Bos taurus OX=9913 GN=GNPDA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006163 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01182 all species →	Glucosamine_iso	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006148 all species →	Domain	Glucosamine/galactosamine-6-phosphate isomerase	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR004547 all species →	Family	Glucosamine-6-phosphate isomerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11280 all species →	GLUCOSAMINE-6-PHOSPHATE ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004342 all species →	Molecular Function	glucosamine-6-phosphate deaminase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006043 all species →	Biological Process	glucosamine catabolic process	Interproscan
GO:0006044 all species →	Biological Process	N-acetylglucosamine metabolic process	Interproscan
GO:0006046 all species →	Biological Process	N-acetylglucosamine catabolic process	Interproscan
GO:0019262 all species →	Biological Process	N-acetylneuraminate catabolic process	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023783-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023783-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

22.2Max TPM

8.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.20	13.24
polyp at pH7 6	18	17	7.59	12.19
coral polyp · control treatment	16	16	9.12	16.48
coral polyp · oil and dispersant treatment	16	16	9.27	21.07
coral polyp · oil treatment	16	16	8.85	21.56
coral polyp · dispersant treatment	16	16	11.76	19.84
Polyp	10	9	6.79	22.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.24
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.13
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.56
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.14
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.47
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.13
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.58
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.45
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.36
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.53
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.18
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.98
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.49
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.08
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.42
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.09
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.56
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.31
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.68
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.53
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.98
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.24
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.06
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.54
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.03
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.