Gene detail

Detailed information of OS493_023791-T1 in Lophelia pertusa

Genomic Location: scaffold_107:443402...448735
NR annotation: KAJ7357660.1, C-Jun-amino-terminal kinase-interacting protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60271	C-Jun-amino-terminal kinase-interacting protein 4 OS=Homo sapiens OX=9606 GN=SPAG9 PE=1 SV=4
Q58A65	C-Jun-amino-terminal kinase-interacting protein 4 OS=Mus musculus OX=10090 GN=Spag9 PE=1 SV=2
Q9UPT6	C-Jun-amino-terminal kinase-interacting protein 3 OS=Homo sapiens OX=9606 GN=MAPK8IP3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005826 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19056 all species →	WD40_2	WD40 repeated domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039911 all species →	Family	JNK-interacting protein 3/4	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13886 all species →	JNK/SAPK-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005078 all species →	Molecular Function	MAP-kinase scaffold activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0019894 all species →	Molecular Function	kinesin binding	Interproscan
GO:0030159 all species →	Molecular Function	signaling receptor complex adaptor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023791-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023791-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

48.2Max TPM

19.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.94	25.07
polyp at pH7 6	18	18	14.16	22.18
coral polyp · control treatment	16	16	26.97	48.15
coral polyp · oil and dispersant treatment	16	16	23.35	30.24
coral polyp · oil treatment	16	16	22.16	39.00
coral polyp · dispersant treatment	16	16	20.37	28.89
Polyp	10	10	9.11	20.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.78
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.05
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.92
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.86
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.95
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.59
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.07
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.18
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.06
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.15
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.88
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.16
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.15
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.85
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.66
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.35
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.58
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.53
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.88
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.89
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.52
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.01
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.48
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.81
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.78

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.