Gene detail

Detailed information of OS493_023795-T1 in Lophelia pertusa

Genomic Location: scaffold_107:485314...486914
NR annotation: KAJ7357664.1, hypothetical protein OS493_023795 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P45481	Histone lysine acetyltransferase CREBBP OS=Mus musculus OX=10090 GN=Crebbp PE=1 SV=3
Q92793	CREB-binding protein OS=Homo sapiens OX=9606 GN=CREBBP PE=1 SV=3
Q6JHU9	Histone lysine acetyltransferase CREBBP OS=Rattus norvegicus OX=10116 GN=Crebbp PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001902 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02135 all species →	zf-TAZ	TAZ zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000197 all species →	Domain	Zinc finger, TAZ-type	Interproscan
IPR035898 all species →	Homologous_superfamily	TAZ domain superfamily	Interproscan
IPR013178 all species →	Family	Histone acetyltransferase Rtt109/CBP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13808 all species →	CBP/P300-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023795-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023795-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

40.3Max TPM

12.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.27	18.29
polyp at pH7 6	18	18	10.31	21.66
coral polyp · control treatment	16	15	13.99	40.35
coral polyp · oil and dispersant treatment	16	13	19.69	37.23
coral polyp · oil treatment	16	15	12.76	27.26
coral polyp · dispersant treatment	16	14	12.89	24.45
Polyp	10	9	6.39	22.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.22
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.90
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.78
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.48
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.75
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.78
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.06
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.65
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.83
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.84
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.58
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.94
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.16
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.74
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.64
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.16
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.74
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.10
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.20
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.54
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.86
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.51
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.