Gene detail

Detailed information of OS493_023824-T1 in Lophelia pertusa

Genomic Location: scaffold_107:775643...793225
NR annotation: KAJ7357691.1, hypothetical protein OS493_023824 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3RXR7	Translation factor GUF1 homolog, mitochondrial OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_56304 PE=3 SV=1
A6QLJ3	Translation factor GUF1, mitochondrial OS=Bos taurus OX=9913 GN=GUF1 PE=2 SV=1
Q8N442	Translation factor GUF1, mitochondrial OS=Homo sapiens OX=9606 GN=GUF1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002510 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00679 all species →	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF06421 all species →	LepA_C	GTP-binding protein LepA C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038363 all species →	Homologous_superfamily	LepA, C-terminal domain superfamily	Interproscan
IPR035647 all species →	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR006297 all species →	Family	Elongation factor 4	Interproscan
IPR000640 all species →	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR035654 all species →	Domain	Elongation factor 4, domain IV	Interproscan
IPR013842 all species →	Domain	GTP-binding protein LepA, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43512 all species →	TRANSLATION FACTOR GUF1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0045727 all species →	Biological Process	positive regulation of translation	Interproscan
GO:0097177 all species →	Molecular Function	mitochondrial ribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023824-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023824-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

131.7Max TPM

13.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.98	14.72
polyp at pH7 6	18	18	12.27	25.14
coral polyp · control treatment	16	16	13.70	42.11
coral polyp · oil and dispersant treatment	16	16	9.85	58.95
coral polyp · oil treatment	16	16	10.25	18.31
coral polyp · dispersant treatment	16	16	6.04	21.81
Polyp	10	10	44.92	131.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.72
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.76
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.03
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.96
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.14
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.22
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.83
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.15
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.59
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.73
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.19
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.26
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.95
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.54
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.36
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.35
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.39
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.08
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	131.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	105.94
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	51.73
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	40.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	32.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	23.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.28

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.