Gene detail

Detailed information of OS493_023849-T1 in Lophelia pertusa

Genomic Location: scaffold_107:1090795...1104955
NR annotation: KAJ7357713.1, Mothers against decapentaplegic 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R1V3	Mothers against decapentaplegic homolog 5 OS=Rattus norvegicus OX=10116 GN=Smad5 PE=1 SV=1
Q1JQA2	Mothers against decapentaplegic homolog 1 OS=Bos taurus OX=9913 GN=SMAD1 PE=2 SV=1
Q9I962	Mothers against decapentaplegic homolog 1 OS=Coturnix japonica OX=93934 GN=SMAD1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001649 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03165 all species →	MH1	MH1 domain	Domain	Interproscan
PF03166 all species →	MH2	MH2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003619 all species →	Domain	MAD homology 1, Dwarfin-type	Interproscan
IPR036578 all species →	Homologous_superfamily	SMAD MH1 domain superfamily	Interproscan
IPR001132 all species →	Domain	SMAD domain, Dwarfin-type	Interproscan
IPR013790 all species →	Family	Dwarfin	Interproscan
IPR013019 all species →	Domain	MAD homology, MH1	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR017855 all species →	Homologous_superfamily	SMAD-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13703 all species →	SMAD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007179 all species →	Biological Process	transforming growth factor beta receptor signaling pathway	Interproscan
GO:0009653 all species →	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0030509 all species →	Biological Process	BMP signaling pathway	Interproscan
GO:0060395 all species →	Biological Process	SMAD protein signal transduction	Interproscan
GO:0070411 all species →	Molecular Function	I-SMAD binding	Interproscan
GO:0071144 all species →	Cellular Component	heteromeric SMAD protein complex	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04676	SMAD1; mothers against decapentaplegic homolog 1	-	Transcriptional misregulation in cancer	ko05202	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_023849-T1 global co-expression network