Gene detail

Detailed information of OS493_023850-T1 in Lophelia pertusa

Genomic Location: scaffold_107:1108338...1114805
NR annotation: KAJ7357714.1, dolichyl-phosphate beta-glucosyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y673	Dolichyl-phosphate beta-glucosyltransferase OS=Homo sapiens OX=9606 GN=ALG5 PE=1 SV=1
Q9DB25	Dolichyl-phosphate beta-glucosyltransferase OS=Mus musculus OX=10090 GN=Alg5 PE=1 SV=1
Q9VLQ1	Dolichyl-phosphate beta-glucosyltransferase OS=Drosophila melanogaster OX=7227 GN=wol PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007199 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00535 all species →	Glycos_transf_2	Glycosyl transferase family 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR001173 all species →	Domain	Glycosyltransferase 2-like	Interproscan
IPR035518 all species →	Domain	Dolichyl-phosphate beta-glucosyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10859 all species →	GLYCOSYL TRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00729	ALG5; dolichyl-phosphate beta-glucosyltransferase	EC:2.4.1.117	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023850-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

46.7Max TPM

25.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.39	34.00
polyp at pH7 6	18	18	28.40	37.41
coral polyp · control treatment	16	16	29.58	46.72
coral polyp · oil and dispersant treatment	16	16	28.04	37.15
coral polyp · oil treatment	16	16	28.26	41.27
coral polyp · dispersant treatment	16	16	19.94	29.45
Polyp	10	10	13.24	21.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.22
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.43
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.54
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.34
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.14
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.03
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.24
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.54
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.66
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.22
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.72
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.49
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.17
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.07
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.21
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.49
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.06
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.91
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.78
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.30
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.85
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.94
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.95
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.23

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.