Gene detail

Detailed information of OS493_023854-T1 in Lophelia pertusa

Genomic Location: scaffold_107:1135822...1141913
NR annotation: KAJ7357718.1, hypothetical protein OS493_023854 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GKT2	Fatty acid hydroxylase domain-containing protein 2 OS=Macaca fascicularis OX=9541 GN=FAXDC2 PE=2 SV=1
Q96IV6	Fatty acid hydroxylase domain-containing protein 2 OS=Homo sapiens OX=9606 GN=FAXDC2 PE=1 SV=1
A0A0D1DT68	Fatty acid hydroxylase ahd1 OS=Mycosarcoma maydis OX=5270 GN=ahd1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005487 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04116 all species →	FA_hydroxylase	Fatty acid hydroxylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050307 all species →	Family	Sterol Desaturase and Related Enzymes	Interproscan
IPR006694 all species →	Domain	Fatty acid hydroxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11863 all species →	STEROL DESATURASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000254 all species →	Molecular Function	C-4 methylsterol oxidase activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0016126 all species →	Biological Process	sterol biosynthetic process	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0008610 all species →	Biological Process	lipid biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22282	FAXDC2; fatty acid hydroxylase domain-containing protein 2	-	Lipid metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023854-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

196.7Max TPM

35.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.06	28.70
polyp at pH7 6	18	18	21.92	30.01
coral polyp · control treatment	16	16	38.83	196.66
coral polyp · oil and dispersant treatment	16	16	53.36	177.70
coral polyp · oil treatment	16	16	25.62	35.52
coral polyp · dispersant treatment	16	16	64.19	140.08
Polyp	10	10	21.83	41.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.70
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.10
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.47
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.97
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.43
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.61
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.56
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.01
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	196.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.73
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.02
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.40
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.20
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.81
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.90
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.71
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	177.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.53
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.11
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.23
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.76
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.96
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.23
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.47
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.63
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.38
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.89
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.65
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.66
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	140.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.66
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.47
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.50
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.06
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.88
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	41.51
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	35.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	29.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	26.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.20
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.