Detailed information of OS493_023902-T1 in Lophelia pertusa

Genomic Location: scaffold_108:539366...548729
NR annotation: KAJ7328633.1, hypothetical protein OS493_023902 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q83HI6Dihydroxy-acid dehydratase OS=Tropheryma whipplei (strain TW08/27) OX=218496 GN=ilvD PE=3 SV=1
Q83GP9Dihydroxy-acid dehydratase OS=Tropheryma whipplei (strain Twist) OX=203267 GN=ilvD PE=3 SV=1
Q49UX2Dihydroxy-acid dehydratase 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=ilvD2 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003009 (this species only)
Transcription factor familyTF_bZIP · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00920
all species →		ILVD_EDDDehydratase familyFamilyInterproscan
PF21300
all species →		LbR_Ice_bindGrass antifreeze beta rollRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037237
all species →		Homologous_superfamilyIlvD/EDD, N-terminal domainInterproscan
IPR000581
all species →		FamilyDihydroxy-acid/6-phosphogluconate dehydrataseInterproscan
IPR050165
all species →		FamilyDihydroxy-acid dehydratase IlvD/EddInterproscan
IPR048518
all species →		RepeatIce-binding protein, beta rollInterproscan
IPR020558
all species →		Conserved_siteDihydroxy-acid/6-phosphogluconate dehydratase, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21000
all species →		DIHYDROXY-ACID DEHYDRATASE DADInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016836
all species →		Molecular Functionhydro-lyase activityInterproscan
GO:0004160
all species →		Molecular Functiondihydroxy-acid dehydratase activityInterproscan
GO:0009082
all species →		Biological Processbranched-chain amino acid biosynthetic processInterproscan
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_023902-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_023902-T1 global co-expression network
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