Gene detail

Detailed information of OS493_023910-T1 in Lophelia pertusa

Genomic Location: scaffold_108:636167...636774
NR annotation: KAJ7328640.1, Mitochondrial intermembrane space import and assembly protein 40 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63ZK1	Mitochondrial intermembrane space import and assembly protein 40-B OS=Xenopus laevis OX=8355 GN=chchd4-b PE=2 SV=1
Q6NU12	Mitochondrial intermembrane space import and assembly protein 40-A OS=Xenopus laevis OX=8355 GN=chchd4-a PE=2 SV=1
Q6PBC3	Mitochondrial intermembrane space import and assembly protein 40 OS=Xenopus tropicalis OX=8364 GN=chchd4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008989 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06747 all species →	CHCH	CHCH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010625 all species →	Domain	CHCH	Interproscan
IPR039289 all species →	Family	Mitochondrial intermembrane space import and assembly protein 40	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21622 all species →	COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005758 all species →	Cellular Component	mitochondrial intermembrane space	Interproscan
GO:0015035 all species →	Molecular Function	protein-disulfide reductase activity	Interproscan
GO:0022417 all species →	Biological Process	protein maturation by protein folding	Interproscan
GO:0045041 all species →	Biological Process	protein import into mitochondrial intermembrane space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023910-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023910-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

62.5Max TPM

9.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.09	12.52
polyp at pH7 6	18	18	9.32	16.92
coral polyp · control treatment	16	16	9.39	56.08
coral polyp · oil and dispersant treatment	16	15	13.02	46.04
coral polyp · oil treatment	16	16	4.70	8.47
coral polyp · dispersant treatment	16	16	11.75	62.48
Polyp	10	10	11.55	44.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.52
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.03
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.47
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.84
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.48
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.77
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.21
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.01
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.73
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.53
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.56
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.18
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.40
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.71
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.52
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.22
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.93
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.47
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	44.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.68
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.78

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.