Gene detail

Detailed information of OS493_023915-T1 in Lophelia pertusa

Genomic Location: scaffold_108:696160...700178
NR annotation: KAJ7328645.1, hypothetical protein OS493_023915 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000432 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04089 all species →	BRICHOS	BRICHOS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007084 all species →	Domain	BRICHOS domain	Interproscan
IPR051772 all species →	Family	Gastrokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16483 all species →	GASTROKINE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023915-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023915-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

534.9Max TPM

32.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.25	45.39
polyp at pH7 6	18	12	11.30	31.47
coral polyp · control treatment	16	16	54.42	534.95
coral polyp · oil and dispersant treatment	16	15	41.93	298.55
coral polyp · oil treatment	16	16	55.60	328.74
coral polyp · dispersant treatment	16	15	8.30	21.72
Polyp	10	10	51.02	324.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.11
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.57
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.46
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.53
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.51
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	534.95
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	160.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.37
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.91
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.99
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.81
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	298.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	252.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.22
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.54
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	328.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	285.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	138.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.63
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.64
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	324.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	157.75
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.56
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.05

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.