Gene detail

Detailed information of OS493_023971-T1 in Lophelia pertusa

Genomic Location: scaffold_109:489888...492071
NR annotation: KAJ7390582.1, Acylphosphatase-2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35745	Acylphosphatase-2 OS=Rattus norvegicus OX=10116 GN=Acyp2 PE=1 SV=2
P14621	Acylphosphatase-2 OS=Homo sapiens OX=9606 GN=ACYP2 PE=1 SV=2
P00819	Acylphosphatase-2 OS=Sus scrofa OX=9823 GN=ACYP2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009110 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00708 all species →	Acylphosphatase	Acylphosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017968 all species →	Conserved_site	Acylphosphatase, conserved site	Interproscan
IPR020456 all species →	Family	Acylphosphatase	Interproscan
IPR036046 all species →	Homologous_superfamily	Acylphosphatase-like domain superfamily	Interproscan
IPR001792 all species →	Domain	Acylphosphatase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10029 all species →	ACYLPHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003998 all species →	Molecular Function	acylphosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01512	acyP; acylphosphatase	EC:3.6.1.7	Aminobenzoate degradation	ko00627	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023971-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

28.4Max TPM

9.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	7.46	11.91
polyp at pH7 6	18	15	8.25	15.14
coral polyp · control treatment	16	16	11.50	28.42
coral polyp · oil and dispersant treatment	16	16	10.14	22.28
coral polyp · oil treatment	16	16	9.39	14.76
coral polyp · dispersant treatment	16	16	10.32	19.81
Polyp	10	9	8.70	14.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.91
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.36
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.28
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.53
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.82
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.45
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.35
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.14
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.09
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.84
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.63
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.81
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.02
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.63
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.92
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.34
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.75
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.77
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.71
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.