Gene detail

Detailed information of OS493_023980-T1 in Lophelia pertusa

Genomic Location: scaffold_109:715462...752684
NR annotation: KAJ7390591.1, hypothetical protein OS493_023980 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_023980-T1

ATGAAAGGGCTTAAAATTACTGATGAAACACTTGAAGATAGATTGGCATATGATGAGATTTTTGTGGAGTACTTCAATGCCTTTTTGGCACTGCCGGCTTTCAACAAGCGACTGCAGTACGACTCGTTATCAGGGGCTTTCAAGGATTTCAGTGGAAAGACTGACTTCAATTTCCAAGAACTACAACCAAGTCAAGATGCAGAGGCTGATGCAAAACAGAGAGAGAAGTCCATTGATTGGGTGAAAAGAGAAAGACTGCCTTTGTTTTTAAAAACCCGTCTGTACCTCGAATACAAACTTTGCCGTCTCCTTTTACGCACGCTCGAAACTCGAACCGCGCGTGTGAGCAGTCGTGGCCTTCGAGGCTACAGCCGTGCCACGAGCTATACTATATTCAGTCCTGTTGGGAACGGAGCACGCCCATCCAGTCGTAACTCAAACCAGTCATGGCCAGGAAATTTAATGCGGCATTTTGGGAGGAGGCCATTGGGTAGTGCATCAAGCCTGCCTGCTATGATGAACTTGGGTCAGAAGGTCGAAGGAACTCATGACAGAGAAAACGGAAGGGAAGATAATAAGAAACCGGAAGACAAGATAGAAGGTGACGTGACCACTGAAGCTCCAAACGCTGGTGGTGATGGCGTGACTCACGCAAACGACGAAACCGACAAGGACGAATTAAAACTTGAAAAGCGCAAGTCAAGAGCTAAAAGTGTCACGCTTAAAGATGAAGTTCTGACTCGCAGTAATTCAGATCCGGGACTCAACGAGGATATCGAATCCAAACCGGAAGCGACAGAGGAACCGGAAGATGACTTATCAGATGTCCCGGATAATGAACTTGGTGCCGTGGTGGAATTTGACGAGGACGAACTCGATGAAGCTCAGACCGAGGCTGATGTTAAAAACATCACAACCAAACATCAAATGACAATCGAGGAACTCAAGAGAGAAGTTCTGGGTTCGTTACAAGGCATGGAACTTTTCAAAACCTTTCTAGAGGACACGTCGGGTAGGCATTTGTTTAATTTTTGGCTGGACGCCGAGCGGTACAAAGACAGTTTACAGTCTGAACCAGAGGAAACGCTACGGGAACAAATGTCAAGATTGTTCAGAGAAATCCAGGACAAGTACAAGAACTTCCTAACGGTTGATGCAAAGGAACAGATCGAGAGAGCACTATATCTTGGGGGGCTGACACAGGAGATGTTTGCGAGAACTCAGTATGACATGCTGAGAAGATTACGTTCCTACTGGATCCCAAGATTCCTTGTTCACGTGGAAAGAAACAGTGACTTCGGAGACCAGTACATGGGGTTCAATGACCTGAACCGGCCGCCGTCAGGCTTGAGTTTCTTTCCCACGCTCTCGTTTGCTCATTCTTTACCACCGCTGGGGGAATGGTGCCGAGAGGTTGTTCGGTCACGCCAGTGGGACCGTGACATCATGGTGAAGGAGAATAGGAACAAGTCAGCGCGGAGAAGACTGAGCCGAATACCTGAAGTGAGTGAAGAGCAATTCACTTCAGCTCTTCGTGGCGAGAAAGAGGCGGGTTGTCCTTTCAAATGTTTCCTGGAAAATAGTTCCATGGACGACAAGTCTTTGTTGTCCTCTCTGCTCTTCTGGCTGGATGTGACCGATTTCAACACGGCGGAGAAGAGGTCTGGTGACCAGTACCTCAGACTGGTCAAGGCTTGGGCGATTTTTAACAAGTATATCGCTAACGATTCTGACATGAGTATTGGACTTCTTCAACCAGAAAGACACAGACTAGAGCGCATTCTCCACTCCACCAACGATTTACCGCTGGCCTTTTTCAAACCGGCTCAGGACCACGCGATCAAGCAACTCGAGCCGAGTTGGGAAGCTTTCAAGCAATACGAAGAGGAGACATTTCTAAAGCCCCTTAAGGGATCTTTCGACCGCGCGTCCATGATATCAAGTGAAAAGGCTGACGACAAGAATCGATATTTCTCGCCTACATCGGGACGCTGGGTGAAAAGACATCCTGGTTCCACGCCGTCCCAGAGACAGAGGCGACTGTATACGTCATTAGCAATGGCAGAGGAAATTGACGCCAGCCGCTCGTCGCCTCGGACAGAATCACCAACAAGGCCATTACCCCCACAACCAGCCAAGGCAAAGAAAACGAAGTCAACGAAGGCGAAAAAGAAAGGCAAAGCAACCAAGAATGTGTCATTTGACGCCAAGAAAAAGAAAGCCACAGACACCGACGACGAAGGATCCGATAGTGAAAAGAAGAAACAGAGTGAACCTGCTAAGGCCGCTGTTATTCCTGATTTTGTGGACGTGTTGGAGAATAAAGGAACCGTGTCAGCCTTCAAGCAATATGTGCAAAACCAGGAAGGAAGGCAGTCGTTGAACCAACTTTTGATGTACTTGGAGATCGAACAGTACAACGCCATTTTACCAGCAAAAAAGATGCAGAAAACACAACAAGCTACGCATATTTACAAGACTTACTTCGACCTCTCATCCAGAAGATCGGTAGGCCTTCCCCAGTCTCTACTCAATCAAGTTGACGGAGAGAGACCCACCTCTCCAGTCTTCACCGAGGCTCAGCAATTTGTACTCAGTGATGTTCAGACATACTTCAAGAGTTTTTTCAAGAATGCGCAAGACGCCGCTGGCCGGCGCGAGGGCACACCAAACACGCCAGGAAGTTTTAACAAGGGAGACGCGTTTGAAAGCTCGCAGAGTTTCTTACAATTATACAGAAGAAGAGCGAGAAAAACCAAGAGTACTGGCCGATCTGCGCCGTCAAAGGAGGACAAAGACAACTTCAAGAAAGTTCTACAGTCGATGCACGGACGTCTTTCTATTAAAATGGAATACTTCAGACGCTATTTACAAACTCACGGTGAACCAGACGGCTTCCCTCGCCTGGAAAACGATCTCGTTTTCTATTTGGAAGTTCAGAAGTTCAAGGAACTATTCAACTACATGGACGATGTTTCTTTAAACCGAAAAGTAGAAGCAATCATTGAATGTTTCTTGGACTCAGCCACCCCTCCCTGGTTGCAGATTGACATCGGTCCCGAACTCGCCTCTCGGATAATCCACAAAGCTCAAGTGTTTTCTTCAGGAAAGAAAGTCCCCAGAGAACAGAAGGATCCGGGACTCTTTGATGAAGCACAGAGTATTCTCTTCAAGGAAATGCTACCTTACTGGGCAGGGTTTTGTAAACAGTACACGCCAACCTGA

Transcript

OS493_023980-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NE09	Regulator of G-protein signaling 22 OS=Homo sapiens OX=9606 GN=RGS22 PE=1 SV=3
G3UYX5	Regulator of G-protein signaling 22 OS=Mus musculus OX=10090 GN=Rgs22 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004292 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan
IPR042651 all species →	Family	Regulator of G-protein signaling 22	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46583 all species →	REGULATOR OF G-PROTEIN SIGNALING 22	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001965 all species →	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023980-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_023980-T1 global co-expression network