Gene detail

Detailed information of OS493_023983-T1 in Lophelia pertusa

Genomic Location: scaffold_109:777538...783055
NR annotation: KAJ7390594.1, BTB/POZ domain-containing protein 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P203	BTB/POZ domain-containing protein 7 OS=Homo sapiens OX=9606 GN=BTBD7 PE=1 SV=3
Q8CFE5	BTB/POZ domain-containing protein 7 OS=Mus musculus OX=10090 GN=Btbd7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006311 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_023983-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR042345 all species →	Family	BTB/POZ domain-containing protein 7	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16064 all species →	BTB POZ DOMAIN CONTAINING 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0061138 all species →	Biological Process	morphogenesis of a branching epithelium	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023983-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023983-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

20.5Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.14	9.60
polyp at pH7 6	18	17	6.50	13.03
coral polyp · control treatment	16	16	11.53	20.52
coral polyp · oil and dispersant treatment	16	16	9.67	15.11
coral polyp · oil treatment	16	16	9.73	14.23
coral polyp · dispersant treatment	16	16	6.34	10.53
Polyp	10	10	6.10	10.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.08
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.24
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.96
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.09
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.02
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.52
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.13
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.92
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.03
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.54
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.40
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.62
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.60
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.96
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.97

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.