Detailed information of OS493_023992-T1 in Lophelia pertusa

Genomic Location: scaffold_109:980608...981844
NR annotation: KAJ7390603.1, positive regulation of rhodopsin protein expression [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9TTF0Photoreceptor-specific nuclear receptor OS=Bos taurus OX=9913 GN=NR2E3 PE=1 SV=2
Q9Y5X4Photoreceptor-specific nuclear receptor OS=Homo sapiens OX=9606 GN=NR2E3 PE=1 SV=1
Q9QXZ7Photoreceptor-specific nuclear receptor OS=Mus musculus OX=10090 GN=Nr2e3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000308 (this species only)
Transcription factor familyESR-like · all TF in this species
Transcription factor familyMiscellaneous · all TF in this species
Transcription factor familyRXR-like · all TF in this species
Transcription factor familySF-like · all TF in this species
Transcription factor familyTHR-like · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00104
all species →		Hormone_recepLigand-binding domain of nuclear hormone receptorDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033544
all species →		FamilyNuclear receptor subfamily 0 group B member 1/2Interproscan
IPR000536
all species →		DomainNuclear hormone receptor, ligand-binding domainInterproscan
IPR001723
all species →		FamilyNuclear hormone receptorInterproscan
IPR035500
all species →		Homologous_superfamilyNuclear hormone receptor-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24081
all species →		NUCLEAR RECEPTOR SUBFAMILY 0 GROUP BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000122
all species →		Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0003714
all species →		Molecular Functiontranscription corepressor activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0008134
all species →		Molecular Functiontranscription factor bindingInterproscan
GO:0043433
all species →		Biological Processnegative regulation of DNA-binding transcription factor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_023992-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_023992-T1 global co-expression network
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