Detailed information of OS493_024000-T1 in Lophelia pertusa

Genomic Location: scaffold_109:1050277...1054657
NR annotation: KAJ7390611.1, SNAP receptor use1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7ZTY7Vesicle transport protein USE1 OS=Danio rerio OX=7955 GN=use1 PE=2 SV=1
Q9NZ43Vesicle transport protein USE1 OS=Homo sapiens OX=9606 GN=USE1 PE=1 SV=2
Q9CQ56Vesicle transport protein USE1 OS=Mus musculus OX=10090 GN=Use1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003495 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09753
all species →		Use1Membrane fusion protein Use1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019150
all species →		FamilyVesicle transport protein, Use1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13050
all species →		USE1-LIKE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005484
all species →		Molecular FunctionSNAP receptor activityInterproscan
GO:0005783
all species →		Cellular Componentendoplasmic reticulumInterproscan
GO:0006890
all species →		Biological Processretrograde vesicle-mediated transport, Golgi to endoplasmic reticulumInterproscan
GO:0031201
all species →		Cellular ComponentSNARE complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K08507USE1; unconventional SNARE in the endoplasmic reticulum protein 1-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_024000-T1 global co-expression network
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