Gene detail

Detailed information of OS493_024050-T1 in Lophelia pertusa

Genomic Location: scaffold_110:281163...282103
NR annotation: KAJ7384036.1, hypothetical protein OS493_024050 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002003 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06140 all species →	Ifi-6-16	Interferon-induced 6-16 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009311 all species →	Family	Interferon alpha-inducible protein IFI6/IFI27-like	Interproscan
IPR038213 all species →	Homologous_superfamily	IFI6/IFI27-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16932 all species →	INTERFERON ALPHA-INDUCIBLE PROTEIN 27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26409	IFI27, ISG12; interferon alpha-inducible protein 27	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024050-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

96TPM > 0

7Conditions

22.5Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	6.32	19.96
polyp at pH7 6	18	16	7.03	22.52
coral polyp · control treatment	16	14	2.94	14.92
coral polyp · oil and dispersant treatment	16	15	3.26	14.51
coral polyp · oil treatment	16	14	3.16	12.87
coral polyp · dispersant treatment	16	13	1.22	3.87
Polyp	10	10	2.92	5.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.41
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.78
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.68
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.99
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.45
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.61
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.40
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.87
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.34
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.51
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.77
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.41
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.29
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.87
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.22
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.71
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.79
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.35

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.