Gene detail

Detailed information of OS493_024054-T1 in Lophelia pertusa

Genomic Location: scaffold_110:377146...409101
NR annotation: KAJ7384040.1, hypothetical protein OS493_024054 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8T882	Tauropine dehydrogenase OS=Arabella iricolor OX=65494 GN=tadh PE=1 SV=1
Q8N0N9	Opine dehydrogenase OS=Haliotis discus hannai OX=42344 GN=tadh PE=2 SV=1
Q8N0P0	Octopine dehydrogenase OS=Mizuhopecten yessoensis OX=6573 GN=odh PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001044 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06140 all species →	Ifi-6-16	Interferon-induced 6-16 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051729 all species →	Family	Opine/Lysopine Dehydrogenase	Interproscan
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR009311 all species →	Family	Interferon alpha-inducible protein IFI6/IFI27-like	Interproscan
IPR038213 all species →	Homologous_superfamily	IFI6/IFI27-like domain superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38015 all species →	BLR6086 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024054-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024054-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

14.6Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.97	5.88
polyp at pH7 6	18	16	4.57	8.74
coral polyp · control treatment	16	16	5.37	8.78
coral polyp · oil and dispersant treatment	16	16	8.87	14.64
coral polyp · oil treatment	16	16	4.82	8.04
coral polyp · dispersant treatment	16	16	4.14	8.01
Polyp	10	10	2.74	4.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.88
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.79
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.60
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.78
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.03
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.90
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.64
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.96
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.75
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.93
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.48
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.55
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.66

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.