Gene detail

Detailed information of OS493_024086-T1 in Lophelia pertusa

Genomic Location: scaffold_110:850348...854505
NR annotation: KAJ7384072.1, hypothetical protein OS493_024086 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009340 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16029 all species →	DUF4787	Domain of unknown function (DUF4787)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031985 all species →	Family	Protein of unknown function DUF4787	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35455 all species →	UNNAMED PRODUCT	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_024086-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024086-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024086-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

68.0Max TPM

28.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.91	39.08
polyp at pH7 6	18	18	34.59	67.98
coral polyp · control treatment	16	16	30.38	38.64
coral polyp · oil and dispersant treatment	16	16	21.18	35.99
coral polyp · oil treatment	16	16	30.15	42.11
coral polyp · dispersant treatment	16	16	17.64	31.39
Polyp	10	10	39.03	56.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.06
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.25
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.30
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.29
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.75
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.59
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.52
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.96
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.41
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.99
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.68
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.89
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.44
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.49
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.28
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.20
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.86
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	56.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	46.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	45.87
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	42.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	42.09
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	39.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	38.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	30.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	28.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.40

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.