Gene detail

Detailed information of OS493_024087-T1 in Lophelia pertusa

Genomic Location: scaffold_110:857649...868722
NR annotation: KAJ7384073.1, hypothetical protein OS493_024087 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IW19	Aprataxin and PNK-like factor OS=Homo sapiens OX=9606 GN=APLF PE=1 SV=1
Q9D842	Aprataxin and PNK-like factor OS=Mus musculus OX=10090 GN=Aplf PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006240 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10283 all species →	zf-CCHH	PBZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019406 all species →	Domain	Aprataxin and PNK-like factor, PBZ domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR039253 all species →	Family	Aprataxin and PNK-like factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21315 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003906 all species →	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13295	APLF; aprataxin and PNK-like factor	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_024087-T1 global co-expression network