Gene detail

Detailed information of OS493_024150-T1 in Lophelia pertusa

Genomic Location: scaffold_111:413741...414708
NR annotation: KAJ7378202.1, PI-PLC X domain-containing protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BLJ3	PI-PLC X domain-containing protein 3 OS=Mus musculus OX=10090 GN=Plcxd3 PE=1 SV=1
A6QNU9	PI-PLC X domain-containing protein 3 OS=Bos taurus OX=9913 GN=PLCXD3 PE=2 SV=1
Q63HM9	PI-PLC X domain-containing protein 3 OS=Homo sapiens OX=9606 GN=PLCXD3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003341 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_024150-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR042158 all species →	Family	PI-PLC X domain-containing protein 1/2/3	Interproscan
IPR051057 all species →	Family	Phosphoinositide phospholipase C domain-containing protein	Interproscan
IPR000909 all species →	Domain	Phosphatidylinositol-specific phospholipase C, X domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13593 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024150-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024150-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

86TPM > 0

7Conditions

12.9Max TPM

1.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	1.24	2.67
polyp at pH7 6	18	12	1.29	4.08
coral polyp · control treatment	16	13	3.16	12.93
coral polyp · oil and dispersant treatment	16	12	2.01	8.38
coral polyp · oil treatment	16	13	2.31	10.03
coral polyp · dispersant treatment	16	13	2.00	8.59
Polyp	10	8	0.93	2.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.87
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.35
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.43
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.28
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.73
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.89
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.59
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.38
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.58
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.64
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.17
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.