Gene detail

Detailed information of OS493_024151-T1 in Lophelia pertusa

Genomic Location: scaffold_111:419929...420966
NR annotation: KAJ7378203.1, PI-PLC X domain-containing protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BLJ3	PI-PLC X domain-containing protein 3 OS=Mus musculus OX=10090 GN=Plcxd3 PE=1 SV=1
A6QNU9	PI-PLC X domain-containing protein 3 OS=Bos taurus OX=9913 GN=PLCXD3 PE=2 SV=1
Q63HM9	PI-PLC X domain-containing protein 3 OS=Homo sapiens OX=9606 GN=PLCXD3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003341 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00388 all species →	PI-PLC-X	Phosphatidylinositol-specific phospholipase C, X domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042158 all species →	Family	PI-PLC X domain-containing protein 1/2/3	Interproscan
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR000909 all species →	Domain	Phosphatidylinositol-specific phospholipase C, X domain	Interproscan
IPR051057 all species →	Family	Phosphoinositide phospholipase C domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13593 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01120	cpdP; 3',5'-cyclic-nucleotide phosphodiesterase	EC:3.1.4.17	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024151-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

21.2Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.62	3.95
polyp at pH7 6	18	18	2.22	4.19
coral polyp · control treatment	16	16	8.01	21.18
coral polyp · oil and dispersant treatment	16	16	4.20	9.62
coral polyp · oil treatment	16	16	4.67	13.77
coral polyp · dispersant treatment	16	16	3.20	8.96
Polyp	10	10	1.35	2.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.63
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.07
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.25
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.80
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.18
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.28
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.62
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.74
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.17
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.71
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.53
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.90
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.88
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.02
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.24
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.42
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.21
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.56
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.34
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.15
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.40
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.23
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.43

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.