Gene detail

Detailed information of OS493_024155-T1 in Lophelia pertusa

Genomic Location: scaffold_111:443473...444195
NR annotation: KAJ7378207.1, PI-PLC X domain-containing protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VAA5	PI-PLC X domain-containing protein 2 OS=Homo sapiens OX=9606 GN=PLCXD2 PE=1 SV=1
B2RXA1	PI-PLC X domain-containing protein 2 OS=Mus musculus OX=10090 GN=Plcxd2 PE=2 SV=1
Q54BH5	PI-PLC X-box domain-containing protein DDB_G0293730 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0293730 PE=4 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003341 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00388 all species →	PI-PLC-X	Phosphatidylinositol-specific phospholipase C, X domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000909 all species →	Domain	Phosphatidylinositol-specific phospholipase C, X domain	Interproscan
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR051057 all species →	Family	Phosphoinositide phospholipase C domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13593 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024155-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024155-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

14.6Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.31	4.32
polyp at pH7 6	18	16	2.02	4.53
coral polyp · control treatment	16	16	5.54	14.61
coral polyp · oil and dispersant treatment	16	16	3.40	9.76
coral polyp · oil treatment	16	16	3.96	7.29
coral polyp · dispersant treatment	16	16	2.05	4.59
Polyp	10	9	2.08	4.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.35
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.41
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.35
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.02
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.97
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.24
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.55
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.04
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.76
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.32
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.92
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.49
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.59
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.33
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.67
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.