Gene detail

Detailed information of OS493_024158-T1 in Lophelia pertusa

Genomic Location: scaffold_111:543743...554377
NR annotation: KAJ7378210.1, hypothetical protein OS493_024158 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002863 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050842 all species →	Family	Cul2-RING E3 Ligase Substrate-Recognition Fem-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24173 all species →	ANKYRIN REPEAT CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024158-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024158-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

11.1Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.63	6.65
polyp at pH7 6	18	16	3.26	7.05
coral polyp · control treatment	16	16	4.83	8.56
coral polyp · oil and dispersant treatment	16	16	3.94	7.38
coral polyp · oil treatment	16	16	4.41	7.10
coral polyp · dispersant treatment	16	16	3.79	11.07
Polyp	10	8	2.14	5.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.40
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.07
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.05
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.44
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.38
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.69
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.02
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.45
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.16
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.69
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.73
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.