Gene detail

Detailed information of OS493_024190-T1 in Lophelia pertusa

Genomic Location: scaffold_111:761364...762734
NR annotation: KAJ7378241.1, Putative beta-lactamase-like 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8MY62	Putative beta-lactamase-like 1 OS=Homo sapiens OX=9606 GN=LACTBL1 PE=1 SV=2
Q54VJ1	Beta-lactamase-like protein 2 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0280307 PE=3 SV=1
Q54SB5	Beta-lactamase-like protein 4 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0282557 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000640 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00144 all species →	Beta-lactamase	Beta-lactamase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001466 all species →	Domain	Beta-lactamase-related	Interproscan
IPR012338 all species →	Homologous_superfamily	Beta-lactamase/transpeptidase-like	Interproscan
IPR051478 all species →	Family	Beta-lactamase-like Antibiotic Biosynthesis/Resistance	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22935 all species →	PENICILLIN-BINDING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_024190-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024190-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024190-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

7.3Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.80	7.31
polyp at pH7 6	18	18	3.99	6.80
coral polyp · control treatment	16	16	1.97	3.97
coral polyp · oil and dispersant treatment	16	15	0.89	2.22
coral polyp · oil treatment	16	16	2.09	4.14
coral polyp · dispersant treatment	16	16	0.73	1.62
Polyp	10	9	2.18	4.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.80
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.65
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.83
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.27
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.33
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.15
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.97
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.25
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.84
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.25
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.19
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.37
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.32
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.06
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.80
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.09
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.54
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.