Gene detail

Detailed information of OS493_024394-T1 in Lophelia pertusa

Genomic Location: scaffold_113:687016...689950
NR annotation: KAJ7357583.1, hypothetical protein OS493_024394 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9Y006	Aquaporin-3 OS=Sus scrofa OX=9823 GN=AQP3 PE=2 SV=1
P47862	Aquaporin-3 OS=Rattus norvegicus OX=10116 GN=Aqp3 PE=2 SV=1
Q08DE6	Aquaporin-3 OS=Bos taurus OX=9913 GN=AQP3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001175 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00230 all species →	MIP	Major intrinsic protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000425 all species →	Family	Major intrinsic protein	Interproscan
IPR023271 all species →	Homologous_superfamily	Aquaporin-like	Interproscan
IPR022357 all species →	Conserved_site	Major intrinsic protein, conserved site	Interproscan
IPR050363 all species →	Family	Major Intrinsic Protein/Aquaporin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43829 all species →	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015267 all species →	Molecular Function	channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006833 all species →	Biological Process	water transport	Interproscan
GO:0015250 all species →	Molecular Function	water channel activity	Interproscan
GO:0015254 all species →	Molecular Function	glycerol channel activity	Interproscan
GO:0015793 all species →	Biological Process	glycerol transmembrane transport	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024394-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024394-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

53.7Max TPM

16.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.15	30.15
polyp at pH7 6	18	16	16.59	26.67
coral polyp · control treatment	16	16	17.25	38.21
coral polyp · oil and dispersant treatment	16	16	15.98	53.72
coral polyp · oil treatment	16	16	19.97	40.84
coral polyp · dispersant treatment	16	16	14.34	35.84
Polyp	10	8	6.25	19.07

Per sample · hover a bar for the full sample record

Show the sample table (110 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.15
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.45
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.17
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.16
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.55
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.60
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.21
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.84
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.61
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.60
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.54
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.12
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.71
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.32
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.99
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.81
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.53
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.54
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.12
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.51
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.10
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.61
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.84
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.07
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.35
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.