Gene detail

Detailed information of OS493_024395-T1 in Lophelia pertusa

Genomic Location: scaffold_113:721166...728983
NR annotation: KAJ7357584.1, Vacuolar protein sorting-associated protein 26A [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DH23	Vacuolar protein sorting-associated protein 26B-like OS=Danio rerio OX=7955 GN=vps26bl PE=2 SV=1
Q68F29	Vacuolar protein sorting-associated protein 26B-A OS=Xenopus laevis OX=8355 GN=vps26b-a PE=2 SV=1
Q7ZV03	Vacuolar protein sorting-associated protein 26B OS=Danio rerio OX=7955 GN=vps26b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007601 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03643 all species →	Vps26	Vacuolar protein sorting-associated protein 26	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028934 all species →	Family	Vacuolar protein sorting protein 26 related	Interproscan
IPR014752 all species →	Homologous_superfamily	Arrestin-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12233 all species →	VACUOLAR PROTEIN SORTING 26 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0030904 all species →	Cellular Component	retromer complex	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18466	VPS26A_B; vacuolar protein sorting-associated protein 26A/B	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_024395-T1 global co-expression network