Gene detail

Detailed information of OS493_024447-T1 in Lophelia pertusa

Genomic Location: scaffold_114:232150...232614
NR annotation: KAJ7328531.1, hypothetical protein OS493_024447 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R1Z7	6-pyruvoyl tetrahydrobiopterin synthase OS=Mus musculus OX=10090 GN=Pts PE=1 SV=2
P27213	6-pyruvoyl tetrahydrobiopterin synthase OS=Rattus norvegicus OX=10116 GN=Pts PE=1 SV=1
Q03393	6-pyruvoyl tetrahydrobiopterin synthase OS=Homo sapiens OX=9606 GN=PTS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009565 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01242 all species →	PTPS	6-pyruvoyl tetrahydropterin synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038418 all species →	Homologous_superfamily	6-pyruvoyl tetrahydropterin synthase/QueD superfamily	Interproscan
IPR007115 all species →	Family	6-pyruvoyl tetrahydropterin synthase/QueD family	Interproscan
IPR022469 all species →	Active_site	6-pyruvoyl tetrahydropterin synthase, histidine active site	Interproscan
IPR022470 all species →	Active_site	6-pyruvoyl tetrahydropterin synthase, cysteine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12589 all species →	PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0003874 all species →	Molecular Function	6-pyruvoyltetrahydropterin synthase activity	Interproscan
GO:0006729 all species →	Biological Process	tetrahydrobiopterin biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01737	queD, ptpS, PTS; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase	EC:4.2.3.12 EC:4.1.2.50	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024447-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

21.6Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.69	18.64
polyp at pH7 6	18	18	10.01	13.98
coral polyp · control treatment	16	16	12.11	21.58
coral polyp · oil and dispersant treatment	16	16	10.74	16.83
coral polyp · oil treatment	16	16	12.70	20.35
coral polyp · dispersant treatment	16	16	6.03	8.39
Polyp	10	9	8.28	14.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.64
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.41
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.06
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.91
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.68
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.98
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.97
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.15
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.61
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.17
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.48
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.03
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.67
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.96
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.35
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.31
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.83
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.56
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.47
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.89
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.82
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.57
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.54
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.70
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.93
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.