Gene detail

Detailed information of OS493_024518-T1 in Lophelia pertusa

Genomic Location: scaffold_114:1141039...1150409
NR annotation: KAJ7328597.1, Exocyst complex component 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96A65	Exocyst complex component 4 OS=Homo sapiens OX=9606 GN=EXOC4 PE=1 SV=1
O35382	Exocyst complex component 4 OS=Mus musculus OX=10090 GN=Exoc4 PE=1 SV=2
Q62824	Exocyst complex component 4 OS=Rattus norvegicus OX=10116 GN=Exoc4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003014 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_024518-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039682 all species →	Family	Exocyst complex component Sec8/EXOC4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14146 all species →	EXOCYST COMPLEX COMPONENT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan
GO:0090522 all species →	Biological Process	vesicle tethering involved in exocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024518-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024518-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

44.0Max TPM

16.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	22.06	44.02
polyp at pH7 6	18	18	20.51	36.61
coral polyp · control treatment	16	16	16.60	26.92
coral polyp · oil and dispersant treatment	16	16	10.29	16.71
coral polyp · oil treatment	16	16	16.90	30.75
coral polyp · dispersant treatment	16	16	12.93	25.99
Polyp	10	8	13.61	36.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.02
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.83
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.06
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.30
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.62
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.61
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.75
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.52
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.93
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.18
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.29
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.70
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.42
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.71
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.81
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.65
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.39
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.77
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.99
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	36.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.01
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.56
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.