Gene detail

Detailed information of OS493_024519-T1 in Lophelia pertusa

Genomic Location: scaffold_114:1154932...1172863
NR annotation: KAJ7328598.1, Exocyst complex component 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62824	Exocyst complex component 4 OS=Rattus norvegicus OX=10116 GN=Exoc4 PE=1 SV=1
O35382	Exocyst complex component 4 OS=Mus musculus OX=10090 GN=Exoc4 PE=1 SV=2
Q96A65	Exocyst complex component 4 OS=Homo sapiens OX=9606 GN=EXOC4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003014 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20652 all species →	Sec8_C	Exocyst complex component Sec8 C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039682 all species →	Family	Exocyst complex component Sec8/EXOC4	Interproscan
IPR048630 all species →	Domain	Exocyst complex component Sec8, middle helical bundle	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14146 all species →	EXOCYST COMPLEX COMPONENT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0032584 all species →	Cellular Component	growth cone membrane	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0090522 all species →	Biological Process	vesicle tethering involved in exocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024519-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024519-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

20.1Max TPM

8.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.13	18.83
polyp at pH7 6	18	18	8.90	16.57
coral polyp · control treatment	16	16	9.80	17.97
coral polyp · oil and dispersant treatment	16	16	6.16	11.70
coral polyp · oil treatment	16	16	9.57	16.05
coral polyp · dispersant treatment	16	16	7.63	15.05
Polyp	10	9	6.35	20.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.83
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.42
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.62
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.65
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.48
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.75
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.69
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.67
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.30
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.83
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.42
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.12
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.75
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.35
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.13
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.